1278. A Comparison of RSV Viral Loads Between Nasopharyngeal and Mid-Turbinate Swabs from Children <24 Months with RSV Infection
Session: Poster Abstract Session: Clinical Infectious Diseases: Respiratory Infections
Friday, October 28, 2016
Room: Poster Hall
  • Blaschke IDWeek 2016.pdf (107.7 kB)
  • Background: Respiratory Syncytial Virus (RSV) is the most common cause of bronchiolitis and pneumonia in infants and children. Diagnosis of RSV can be made by molecular detection of RSV in a swab of respiratory secretions. Nasopharyngeal (NP) swabs are the most frequent swab type validated for the detection of RSV, and are often considered the "gold standard" for quantification studies. However, NP sampling is invasive and uncomfortable. We sought to determine whether a less invasive method, a mid-turbinate (MT) swab, was comparable to NP sampling for quantification of RSV in children.

    Methods: We prospectively enrolled children < 24 months hospitalized at Primary ChildrenÕs Hospital (Salt Lake City, UT) with a confirmed diagnosis of RSV. Both an NP and MT swab were collected from each infant from different nostrils; subjects were randomized (1:1:1:1) as to the order of collection (left/right nostril first with MT/NP swab first), and parents were asked which collection method (NP vs. MT) they preferred after collection. Viral loads were measured by real-time RT-qPCR. The correlation between the viral loads generated from the MT and NP swabs was examined. A paired two-sample t test was used to evaluate the difference between viral loads obtained from the MT and NP swabs.

    Results: Swabs were collected from 30 infants, with a median age of 240 days [range 1-527]. 4 infants had swabs collected on multiple consecutive days. The median (Q1,Q3) duration of symptoms prior to enrollment was 5 days (4,7) and the median (Q1,Q3)  hospital stay length was 2 days (1,4). 1 infant was RSV negative according to the RT-qPCR assay. The mean (SD) viral loads were similar; 7.24 (1.7) and 7.01 (1.8) log10 copies/mL for 34 paired NP and MT swabs, respectively, with p value =0.59; see Figure 1 for median, range and quartiles. The correlation coefficient between the paired viral loads was high (0.88); see Figure 2 for scatter plot. Most parents (19/24 [79%]) who watched the swabbing preferred the MT swab to the NP swab.

    Conclusion: MT swabs perform as well as NP swabs for the quantification of RSV in infants. MT swabs are less invasive and preferred by parents for sampling. MT swabs have the potential to replace the NP swab as the "gold standard" for quantitative respiratory viral sampling.

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    Anne J. Blaschke, MD, PhD, FIDSA, FPIDS1, Matthew Mckevitt, PhD2, Krow Ampofo, MD, FIDSA, FPIDS1, Tammi Lewis, BS3, Ying Guo, PhD2, Julianna Dorsch, BS3, Erin Vanderhoof, BS3, Pricilla Rosen, BSc1, Volker Freimann, BS4, E. Kent Korgenski, MS5, Seth Toback, M.D.2 and Jason Chien, M.D.2, (1)Department of Pediatrics, Division of Pediatric Infectious Diseases, University of Utah School of Medicine, Salt Lake City, UT, (2)Gilead Sciences, Inc., Foster City, CA, (3)Clinical Trials Office, University of Utah School of Medicine, Salt Lake City, UT, (4)Critical Care, University of Utah School of Medicine, Salt Lake City, UT, (5)Department of Pediatrics, Pediatric Clinical Program, University of Utah School of Medicine and Intermountain Healthcare, Salt Lake City, UT


    A. J. Blaschke, Gilead Sciences, Inc.: Collaborator , Research support
    BioFire Diagnostics, LLC: Advisor regarding risks associated with FDA-cleared products and Collaborator , Consulting fee and Licensing agreement or royalty

    M. Mckevitt, None

    K. Ampofo, None

    T. Lewis, None

    Y. Guo, None

    J. Dorsch, None

    E. Vanderhoof, None

    P. Rosen, None

    V. Freimann, None

    E. K. Korgenski, None

    S. Toback, None

    J. Chien, None

    Findings in the abstracts are embargoed until 12:01 a.m. CDT, Wednesday Oct. 26th with the exception of research findings presented at the IDWeek press conferences.